Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs34882639 | chr14:23187164 | A/G | 1.29E-6 | 485 | 15.3 | 17.07 | 21.67 | KM Plot |
| THCA | rs34884234 | chr11:57089556 | G/C | 2.17E-11 | 487 | 16.33 | 14.45 | 20.77 | KM Plot |
| THCA | rs34896897 | chr1:22398905 | A/G | 5.87E-8 | 487 | 15.17 | 17.68 | 9.47 | KM Plot |
| THCA | rs34900980 | chr16:20755650 | G/A | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs34976155 | chr17:57382292 | C/T | 5.26E-9 | 476 | 15.8 | 15.9 | 16.98 | KM Plot |
| THCA | rs34978145 | chr14:23224025 | T/C | 1.57E-9 | 488 | 15.32 | 17.05 | 19.02 | KM Plot |
| THCA | rs35010655 | chr3:58245155 | C/T | 0.000169 | 466 | 15 | 17.6 | 12.72 | KM Plot |
| THCA | rs35035331 | chr19:15867294 | GA/G | 0.000309 | 490 | 16.33 | 14.93 | 19.13 | KM Plot |
| THCA | rs35066931 | chr1:184106729 | T/C | 0 | 473 | 15.65 | 17.6 | 34.1 | KM Plot |
| THCA | rs35074447 | chr16:20860020 | T/C | 3.72E-10 | 490 | 15.97 | 14.95 | 14.3 | KM Plot |
| THCA | rs35081235 | chr14:36024634 | C/T | 6.01E-6 | 481 | 16.22 | 16.07 | 8.33 | KM Plot |
| THCA | rs35122562 | chr16:20816898 | A/C | 4.04E-10 | 487 | 16.02 | 15.98 | 14.3 | KM Plot |
| THCA | rs35132773 | chr3:14570567 | G/C | 1.43E-6 | 490 | 16.67 | 15 | 14.2 | KM Plot |
| THCA | rs35132908 | chr3:183429570 | G/A | 2.56E-5 | 467 | 16.63 | 14.7 | 9 | KM Plot |
| THCA | rs35137814 | chr16:20758433 | C/A | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |